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» Accelerating Protein Classification Using Suffix Trees
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ISMB
2000
13 years 8 months ago
Accelerating Protein Classification Using Suffix Trees
Position-specific scoring matrices have been used extensively to recognize highly conserved protein regions. We present a method for accelerating these searches using a suffix tre...
Bogdan Dorohonceanu, Craig G. Nevill-Manning
ML
2006
ACM
132views Machine Learning» more  ML 2006»
13 years 7 months ago
A suffix tree approach to anti-spam email filtering
We present an approach to email filtering based on the suffix tree data structure. A method for the scoring of emails using the suffix tree is developed and a number of scoring and...
Rajesh Pampapathi, Boris Mirkin, Mark Levene
VLDB
2002
ACM
184views Database» more  VLDB 2002»
14 years 7 months ago
Database indexing for large DNA and protein sequence collections
Our aim is to develop new database technologies for the approximate matching of unstructured string data using indexes. We explore the potential of the suffix tree data structure i...
Ela Hunt, Malcolm P. Atkinson, Robert W. Irving
CSB
2005
IEEE
233views Bioinformatics» more  CSB 2005»
13 years 9 months ago
PSIST: Indexing Protein Structures Using Suffix Trees
Feng Gao, Mohammed Javeed Zaki
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
13 years 11 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya