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CIBCB
2007
IEEE
14 years 15 days ago
Hybrid Architecture for Accelerating DNA Codeword Library Searching
-- A large and reliable DNA codeword library is the key to the success of DNA based computing. Searching for the set of reliable DNA codewords is an NP-hard problem, which can take...
Qinru Qiu, Daniel J. Burns, Qing Wu, Prakash Mukre
DNA
2007
Springer
106views Bioinformatics» more  DNA 2007»
14 years 13 days ago
Hardware Acceleration for Thermodynamic Constrained DNA Code Generation
Reliable DNA computing requires a large pool of oligonucleotides that do not produce cross-hybridize. In this paper, we present a transformed algorithm to calculate the maximum wei...
Qinru Qiu, Prakash Mukre, Morgan Bishop, Daniel J....
SDM
2004
SIAM
207views Data Mining» more  SDM 2004»
13 years 10 months ago
BAMBOO: Accelerating Closed Itemset Mining by Deeply Pushing the Length-Decreasing Support Constraint
Previous study has shown that mining frequent patterns with length-decreasing support constraint is very helpful in removing some uninteresting patterns based on the observation t...
Jianyong Wang, George Karypis
BMCBI
2008
83views more  BMCBI 2008»
13 years 8 months ago
An efficient genetic algorithm for structural RNA pairwise alignment and its application to non-coding RNA discovery in yeast
Background: Aligning RNA sequences with low sequence identity has been a challenging problem since such a computation essentially needs an algorithm with high complexities for tak...
Akito Taneda
PERCOM
2005
ACM
14 years 8 months ago
The Problem of Bluetooth Pollution and Accelerating Connectivity in Bluetooth Ad-Hoc Networks
This paper investigates a real-world problem termed "Bluetooth (BTH) pollution", which is expected to become commonplace as the mass deployment of BTH devices continues....
Somil Asthana, Dimitris N. Kalofonos