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IPPS
2009
IEEE
15 years 11 months ago
CellMR: A framework for supporting mapreduce on asymmetric cell-based clusters
The use of asymmetric multi-core processors with onchip computational accelerators is becoming common in a variety of environments ranging from scientific computing to enterprise...
M. Mustafa Rafique, Benjamin Rose, Ali Raza Butt, ...
BMCBI
2004
208views more  BMCBI 2004»
15 years 4 months ago
Hybrid clustering for microarray image analysis combining intensity and shape features
Background: Image analysis is the first crucial step to obtain reliable results from microarray experiments. First, areas in the image belonging to single spots have to be identif...
Jörg Rahnenführer, Daniel Bozinov
STACS
2007
Springer
15 years 10 months ago
Small Space Representations for Metric Min-Sum k -Clustering and Their Applications
The min-sum k-clustering problem is to partition a metric space (P, d) into k clusters C1, . . . , Ck ⊆ P such that k i=1 p,q∈Ci d(p, q) is minimized. We show the first effi...
Artur Czumaj, Christian Sohler
BMCBI
2010
144views more  BMCBI 2010»
15 years 4 months ago
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Background: The investigation of plant genome structure and evolution requires comprehensive characterization of repetitive sequences that make up the majority of higher plant nuc...
Petr Novák, Pavel Neumann, Jirí Maca...
BMCBI
2010
104views more  BMCBI 2010»
15 years 4 months ago
Analysis of protein-protein docking decoys using interaction fingerprints: application to the reconstruction of CaM-ligand compl
Background: Protein-protein docking for proteins with large conformational changes was analyzed by using interaction fingerprints, one of the scales for measuring similarities amo...
Nobuyuki Uchikoga, Takatsugu Hirokawa