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» Adaptive Modeling of Biochemical Pathways
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SBP
2012
Springer
12 years 3 months ago
The Impact of Network Structure on the Perturbation Dynamics of a Multi-agent Economic Model
Complex adaptive systems (CAS) modeling has become a common tool to study the behavioral dynamics of agents in a broad range of disciplines from ecology to economics. Many modelers...
Marshall A. Kuypers, Walter E. Beyeler, Robert J. ...
IPPS
2009
IEEE
14 years 2 months ago
Long time-scale simulations of in vivo diffusion using GPU hardware
To address the problem of performing long time simulations of biochemical pathways under in vivo cellular conditions, we have developed a lattice-based, reaction-diffusion model t...
Elijah Roberts, John E. Stone, Leonardo Sepulveda,...
BMCBI
2010
202views more  BMCBI 2010»
13 years 7 months ago
NeMo: Network Module identification in Cytoscape
Background: As the size of the known human interactome grows, biologists increasingly rely on computational tools to identify patterns that represent protein complexes and pathway...
Corban G. Rivera, Rachit Vakil, Joel S. Bader
BIODATAMINING
2008
140views more  BIODATAMINING 2008»
13 years 7 months ago
Modeling gene-by-environment interaction in comorbid depression with alcohol use disorders via an integrated bioinformatics appr
Background: Comorbidity of Major Depressive Disorder (depression) and Alcohol Use Disorders (AUD) is well documented. Depression, AUD, and the comorbidity of depression with AUD s...
Richard C. McEachin, Benjamin J. Keller, Erika F. ...
IJON
2006
90views more  IJON 2006»
13 years 7 months ago
Adaptive sensory processing for efficient place coding
This work presents a neural model of self-localisation implemented on a simulated mobile robot with a realistic visual input. A population of modelled place cells with overlapping...
Denis Sheynikhovich, Ricardo Chavarriaga, Thomas S...