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» Adaptive Modeling of Biochemical Pathways
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CMSB
2006
Springer
13 years 11 months ago
Stronger Computational Modelling of Signalling Pathways Using Both Continuous and Discrete-State Methods
Abstract. Starting from a biochemical signalling pathway model expressed in a process algebra enriched with quantitative information we automatically derive both continuous-space a...
Muffy Calder, Adam Duguid, Stephen Gilmore, Jane H...
BIOINFORMATICS
2006
87views more  BIOINFORMATICS 2006»
13 years 7 months ago
COPASI - a COmplex PAthway SImulator
Simulation and modeling is becoming one of the standard approaches to understand complex biochemical processes. Therefore, there is a big need for software tools that allow access...
Stefan Hoops, Sven Sahle, Ralph Gauges, Christine ...
JIB
2007
136views more  JIB 2007»
13 years 7 months ago
SABIO-RK: A data warehouse for biochemical reactions and their kinetics
Systems biology is an emerging field that aims at obtaining a system-level understanding of biological processes. The modelling and simulation of networks of biochemical reactions...
Olga Krebs, Martin Golebiewski, Renate Kania, Saqi...
CMSB
2008
Springer
13 years 9 months ago
A Language for Biochemical Systems
Abstract. CBS is a Calculus of Biochemical Systems intended to allow the modelling of metabolic, signalling and regulatory networks in a natural and modular manner. In this paper w...
Michael Pedersen, Gordon D. Plotkin
ECAI
2004
Springer
14 years 26 days ago
Towards a Logical Analysis of Biochemical Reactions
We provide a logical model of biochemical reactions and show how hypothesis generation using weakest sufficient and strongest necessary conditions may be used to provide addition...
Patrick Doherty, Steve Kertes, Martin Magnusson, A...