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» Adaptive Parallelism for OpenMP Task Parallel Programs
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ASAP
2008
IEEE
186views Hardware» more  ASAP 2008»
14 years 2 months ago
Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs
RNA structure prediction, or folding, is a computeintensive task that lies at the core of several search applications in bioinformatics. We begin to address the need for high-thro...
Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberla...
ACS
2011
13 years 2 months ago
Algebras of Higher Operads as Enriched Categories
Abstract. One of the open problems in higher category theory is the systematic construction of the higher dimensional analogues of the Gray tensor product. In this paper we begin t...
Michael Batanin, Mark Weber
ICA3PP
2005
Springer
14 years 1 months ago
GridMD: Program Architecture for Distributed Molecular Simulation
In the present work we describe architectural concepts of the distributed molecular simulation package GridMD. The main purpose of this work is to underline the construction patter...
Ilya Valuev
ICLP
1999
Springer
13 years 12 months ago
Comparing Trailing and Copying for Constraint Programming
A central service of a constraint programming system is search. In almost all constraint programming systems search is based on trailing, which is well understood and known to be ...
Christian Schulte
WOB
2004
120views Bioinformatics» more  WOB 2004»
13 years 9 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...