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BMCBI
2006
122views more  BMCBI 2006»
13 years 8 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...
ANCS
2011
ACM
12 years 8 months ago
ReClick - A Modular Dataplane Design Framework for FPGA-Based Network Virtualization
Network virtualization has emerged as a powerful technique to deploy novel services and experimental protocols over shared network infrastructures. Although recent research has hi...
Deepak Unnikrishnan, Justin Lu, Lixin Gao, Russell...
LCTRTS
2005
Springer
14 years 1 months ago
Cache aware optimization of stream programs
Effective use of the memory hierarchy is critical for achieving high performance on embedded systems. We focus on the class of streaming applications, which is increasingly preval...
Janis Sermulins, William Thies, Rodric M. Rabbah, ...
IJHPCA
2008
75views more  IJHPCA 2008»
13 years 8 months ago
Towards Ultra-High Resolution Models of Climate and Weather
We present a speculative extrapolation of the performance aspects of an atmospheric general circulation model to ultra-high resolution and describe alternative technological paths...
Michael F. Wehner, Leonid Oliker, John Shalf
PLDI
2003
ACM
14 years 1 months ago
Linear analysis and optimization of stream programs
As more complex DSP algorithms are realized in practice, an increasing need for high-level stream abstractions that can be compiled without sacrificing efficiency. Toward this en...
Andrew A. Lamb, William Thies, Saman P. Amarasingh...