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» Advances on sorting by reversals
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CIBCB
2005
IEEE
14 years 1 months ago
Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming
— Hannenhalli and Pevzner developed the first polynomial-time algorithm for the combinatorial problem of sorting of signed genomic data. Their algorithm solves the minimum numbe...
Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikae...
TCBB
2010
137views more  TCBB 2010»
13 years 2 months ago
The Metropolized Partial Importance Sampling MCMC Mixes Slowly on Minimum Reversal Rearrangement Paths
Markov chain Monte Carlo has been the standard technique for inferring the posterior distribution of genome rearrangement scenarios under a Bayesian approach. We present here a neg...
István Miklós, Bence Melykuti, Krist...
RECOMB
2008
Springer
14 years 8 months ago
Perfect DCJ Rearrangement
We study the problem of transforming a multichromosomal genome into another using Double-Cut-and-Join (DCJ) operations. We introduce the notion of DCJ scenario that does not break ...
Sèverine Bérard, Annie Chateau, Cedr...
RECOMB
2010
Springer
13 years 6 months ago
The Problem of Chromosome Reincorporation in DCJ Sorting and Halving
We study two problems in the double cut and join (DCJ) model: sorting – transforming one multilinear genome into another and halving – transforming a duplicated genome into a p...
Jakub Kovác, Marília D. V. Braga, Je...
CPM
2001
Springer
108views Combinatorics» more  CPM 2001»
14 years 11 days ago
A Very Elementary Presentation of the Hannenhalli-Pevzner Theory
In 1995, Hannenhalli and Pevzner gave a first polynomial solution to the problem of finding the minimum number of reversals needed to sort a signed permutation.Their solution, a...
Anne Bergeron