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BIOINFORMATICS
2010
87views more  BIOINFORMATICS 2010»
13 years 9 months ago
Improving protein secondary structure prediction using a simple k-mer model
Motivation: Existing methods for protein sequence analysis are generally firstorder and inherently assume that each position is independent. We develop a general framework for int...
Martin Madera, Ryan Calmus, Grant Thiltgen, Kevin ...
SIGIR
2004
ACM
14 years 3 months ago
Context sensitive vocabulary and its application in protein secondary structure prediction
Protein secondary structure prediction is an important step towards understanding the relation between protein sequence and structure. However, most current prediction methods use...
Yan Liu, Jaime G. Carbonell, Judith Klein-Seethara...
BMCBI
2006
101views more  BMCBI 2006»
13 years 9 months ago
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives
Background: Predicting residues' contacts using primary amino acid sequence alone is an important task that can guide 3D structure modeling and can verify the quality of the ...
Petras J. Kundrotas, Emil Alexov
ACL
2009
13 years 7 months ago
A Ranking Approach to Stress Prediction for Letter-to-Phoneme Conversion
Correct stress placement is important in text-to-speech systems, in terms of both the overall accuracy and the naturalness of pronunciation. In this paper, we formulate stress ass...
Qing Dou, Shane Bergsma, Sittichai Jiampojamarn, G...
GCB
1998
Springer
78views Biometrics» more  GCB 1998»
14 years 1 months ago
Computational approaches to identify Leucine Zippers
The leucine zipper is a dimerization domain occurring mostly in regulatory and thus in many oncogenic proteins. The leucine repeat in the sequence has been traditionally used for ...
Erich Bornberg-Bauer