Motivation: Existing methods for protein sequence analysis are generally firstorder and inherently assume that each position is independent. We develop a general framework for int...
Martin Madera, Ryan Calmus, Grant Thiltgen, Kevin ...
Protein secondary structure prediction is an important step towards understanding the relation between protein sequence and structure. However, most current prediction methods use...
Yan Liu, Jaime G. Carbonell, Judith Klein-Seethara...
Background: Predicting residues' contacts using primary amino acid sequence alone is an important task that can guide 3D structure modeling and can verify the quality of the ...
Correct stress placement is important in text-to-speech systems, in terms of both the overall accuracy and the naturalness of pronunciation. In this paper, we formulate stress ass...
The leucine zipper is a dimerization domain occurring mostly in regulatory and thus in many oncogenic proteins. The leucine repeat in the sequence has been traditionally used for ...