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IPPS
2006
IEEE
14 years 2 months ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...
GIS
2009
ACM
14 years 9 months ago
A Parallel Plane Sweep Algorithm for Multi-Core Systems
A parallel version of the plane sweep algorithm targeted towards the small number of processing cores available on commonly available multi-core systems is presented. Experimental...
Mark McKenney, Tynan McGuire
ICCS
2009
Springer
14 years 2 months ago
Experience with Approximations in the Trust-Region Parallel Direct Search Algorithm
Recent years have seen growth in the number of algorithms designed to solve challenging simulation-based nonlinear optimization problems. One such algorithm is the Trust-Region Par...
S. M. Shontz, V. E. Howle, P. D. Hough
EUROPAR
2004
Springer
14 years 1 months ago
A Coarse-Grained Parallel Algorithm for Spanning Tree and Connected Components
Computing a spanning tree and the connected components of a graph are basic problems in Graph Theory and arise as subproblems in many applications. Dehne et al. present a BSP/CGM a...
Edson Norberto Cáceres, Frank K. H. A. Dehn...
SEFM
2008
IEEE
14 years 2 months ago
A Fast Algorithm to Compute Heap Memory Bounds of Java Card Applets
We present an approach to find upper bounds of heap space for Java Card applets. Our method first transforms an input bytecode stream into a control flow graph (CFG), and then ...
Tuan-Hung Pham, Anh-Hoang Truong, Ninh-Thuan Truon...