The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...
A parallel version of the plane sweep algorithm targeted towards the small number of processing cores available on commonly available multi-core systems is presented. Experimental...
Recent years have seen growth in the number of algorithms designed to solve challenging simulation-based nonlinear optimization problems. One such algorithm is the Trust-Region Par...
Computing a spanning tree and the connected components of a graph are basic problems in Graph Theory and arise as subproblems in many applications. Dehne et al. present a BSP/CGM a...
We present an approach to find upper bounds of heap space for Java Card applets. Our method first transforms an input bytecode stream into a control flow graph (CFG), and then ...