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» Algorithmic Folding Complexity

BMCBI
2008

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Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure

13 years 10 months ago

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Background: Amino acid sequence probability distributions, or profiles, have been used successfully to predict secondary structure and local structure in proteins. Profile models ...

Christopher Bystroff, Bobbie-Jo M. Webb-Robertson

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CPM
2000
Springer

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Explaining and Controlling Ambiguity in Dynamic Programming

14 years 2 months ago

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Abstract. Ambiguity in dynamic programming arises from two independent sources, the non-uniqueness of optimal solutions and the particular recursion scheme by which the search spac...

Robert Giegerich

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JDA
2006

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A note on the complexity of minimum dominating set

13 years 10 months ago

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The currently (asymptotically) fastest algorithm for minimum dominating set on graphs of n nodes is the trivial (2n) algorithm which enumerates and checks all the subsets of

Fabrizio Grandoni

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Book

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Computational Modeling and Complexity Science

15 years 8 months ago

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"This book is about data structures and algorithms, intermediate programming in Python, complexity science and the philosophy of science"

Allen B. Downey

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