49 search results - page 5 / 10 » Algorithmic Thermodynamics |
IPPS
2006
IEEE
14 years 1 months ago
2006
IEEE
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
ICASSP
2008
IEEE
14 years 1 months ago
2008
IEEE
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
ICANN
2001
Springer
13 years 12 months ago
2001
Springer
In many practical engineering design problems, the form of objective function is not given explicitly in terms of design variables. Given the value of design variables, under this ...
JCB
2008
13 years 7 months ago
2008
We define new measures of sequence similarity for oligonucleotide probe design. These new measures incorporate the nearest neighbor k-stem motifs in their definition, but can be e...
BMCBI
2008
13 years 7 months ago
2008
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...