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» Algorithms for Finding Gene Clusters
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145
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ICANN
2009
Springer
15 years 9 days ago
Mining Rules for the Automatic Selection Process of Clustering Methods Applied to Cancer Gene Expression Data
Different algorithms have been proposed in the literature to cluster gene expression data, however there is no single algorithm that can be considered the best one independently on...
André C. A. Nascimento, Ricardo Bastos Cava...
112
Voted
ICML
2010
IEEE
15 years 3 months ago
Finding Planted Partitions in Nearly Linear Time using Arrested Spectral Clustering
We describe an algorithm for clustering using a similarity graph. The algorithm (a) runs in O(n log3 n + m log n) time on graphs with n vertices and m edges, and (b) with high pro...
Nader H. Bshouty, Philip M. Long
JCP
2008
92views more  JCP 2008»
15 years 2 months ago
A Hierarchical Gene-Set Genetic Algorithm
In this paper, gene sets, instead of individual genes, are used in the genetic process to speed up convergence. A gene-set mutation operator is proposed, which can make several nei...
Tzung-Pei Hong, Min-Thai Wu
142
Voted
SDM
2003
SIAM
184views Data Mining» more  SDM 2003»
15 years 3 months ago
Finding Clusters of Different Sizes, Shapes, and Densities in Noisy, High Dimensional Data
The problem of finding clusters in data is challenging when clusters are of widely differing sizes, densities and shapes, and when the data contains large amounts of noise and out...
Levent Ertöz, Michael Steinbach, Vipin Kumar
108
Voted
KDD
2003
ACM
145views Data Mining» more  KDD 2003»
16 years 3 months ago
Carpenter: finding closed patterns in long biological datasets
The growth of bioinformatics has resulted in datasets with new characteristics. These datasets typically contain a large number of columns and a small number of rows. For example,...
Feng Pan, Gao Cong, Anthony K. H. Tung, Jiong Yang...