Background: Copy number variants (CNVs), including deletions, amplifications, and other rearrangements, are common in human and cancer genomes. Copy number data from array compara...
Anna M. Ritz, Pamela L. Paris, Michael Ittmann, Co...
In this paper we present our work toward FPGA acceleration of phylogenetic reconstruction, a type of analysis that is commonly performed in the fields of systematic biology and co...
Theproblemofsortingsignedpermutationsbyreversalsisinspiredbygenomerearrangementproblemsincomputationalmolecular biology. Given two genomes represented as signed permutations of th...
Abstract. As data about genomic architecture accumulates, genomic rearrangements have attracted increasing attention. One of the main rearrangement mechanisms, inversions (also cal...
Krister M. Swenson, Yu Lin, Vaibhav Rajan, Bernard...
Abstract. The genomic median problem is an optimization problem inspired by a biological issue: it aims at finding the chromosome organization of the common ancestor to multiple li...