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BMCBI
2006
166views more  BMCBI 2006»
13 years 8 months ago
SEQOPTICS: a protein sequence clustering system
Background: Protein sequence clustering has been widely used as a part of the analysis of protein structure and function. In most cases single linkage or graph-based clustering al...
Yonghui Chen, Kevin D. Reilly, Alan P. Sprague, Zh...
SISAP
2010
IEEE
135views Data Mining» more  SISAP 2010»
13 years 6 months ago
Improving the similarity search of tandem mass spectra using metric access methods
In biological applications, the tandem mass spectrometry is a widely used method for determining protein and peptide sequences from an ”in vitro” sample. The sequences are not...
Jiri Novák, Tomás Skopal, David Hoks...
FCSC
2010
238views more  FCSC 2010»
13 years 5 months ago
Knowledge discovery through directed probabilistic topic models: a survey
Graphical models have become the basic framework for topic based probabilistic modeling. Especially models with latent variables have proved to be effective in capturing hidden str...
Ali Daud, Juanzi Li, Lizhu Zhou, Faqir Muhammad
ICALP
2009
Springer
14 years 8 months ago
Counting Subgraphs via Homomorphisms
We introduce a generic approach for counting subgraphs in a graph. The main idea is to relate counting subgraphs to counting graph homomorphisms. This approach provides new algori...
Omid Amini, Fedor V. Fomin, Saket Saurabh
ICCAD
2006
IEEE
139views Hardware» more  ICCAD 2006»
14 years 5 months ago
Analog placement with symmetry and other placement constraints
In order to handle device matching in analog circuits, some pairs of modules are required to be placed symmetrically. This paper addresses this device-level placement problem for ...
Yiu-Cheong Tam, Evangeline F. Y. Young, Chris C. N...