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» Algorithms for optimizing production DNA sequencing
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BMCBI
2010
161views more  BMCBI 2010»
13 years 4 months ago
LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes
Background: Physical maps are the substrate of genome sequencing and map-based cloning and their construction relies on the accurate assembly of BAC clones into large contigs that...
Zeev Frenkel, Etienne Paux, David I. Mester, Cathe...
AI
2010
Springer
13 years 7 months ago
Optimal query complexity bounds for finding graphs
We consider the problem of finding an unknown graph by using two types of queries with an additive property. Given a graph, an additive query asks the number of edges in a set of ...
Sung-Soon Choi, Jeong Han Kim
DATESO
2010
150views Database» more  DATESO 2010»
13 years 5 months ago
Evolving Quasigroups by Genetic Algorithms
Abstract. Quasigroups are a well-known combinatorial design equivalent to more familiar Latin squares. Because all possible elements of a quasigroup occur with equal probability, i...
Václav Snásel, Jiri Dvorský, ...
CIBCB
2005
IEEE
13 years 9 months ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos
BMCBI
2006
161views more  BMCBI 2006»
13 years 7 months ago
A novel approach to phylogenetic tree construction using stochastic optimization and clustering
Background: The problem of inferring the evolutionary history and constructing the phylogenetic tree with high performance has become one of the major problems in computational bi...
Ling Qin, Yixin Chen, Yi Pan, Ling Chen