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» Algorithms for phylogenetic footprinting
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BMCBI
2006
103views more  BMCBI 2006»
13 years 7 months ago
Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequili
Background: The discovery of cis-regulatory motifs still remains a challenging task even though the number of sequenced genomes is constantly growing. Computational analyses using...
Kenneth W. Berendzen, Kurt Stüber, Klaus Hart...
IPPS
2007
IEEE
14 years 1 months ago
Building the Tree of Life on Terascale Systems
Bayesian phylogenetic inference is an important alternative to maximum likelihood-based phylogenetic method. However, inferring large trees using the Bayesian approach is computat...
Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Bria...
ICASSP
2011
IEEE
12 years 11 months ago
Wavelet footprints for detection and sorting of extracellular neural action potentials
Spike detection and sorting is a fundamental step in the analysis of extracellular neural recording. Here, we propose a combined spike detection-feature extraction algorithm that ...
Ki Yong Kwon, Karim G. Oweiss
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
14 years 25 days ago
A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance
Phylogenetic tree searching algorithms often produce thousands of trees which biologists save in Newick format in order to perform further analysis. Unfortunately, Newick is neithe...
Robert S. Boyer, Warren A. Hunt Jr., Serita M. Nel...
CIKM
2009
Springer
14 years 1 months ago
Beyond hyperlinks: organizing information footprints in search logs to support effective browsing
While current search engines serve known-item search such as homepage finding very well, they generally cannot support exploratory search effectively. In exploratory search, user...
Xuanhui Wang, Bin Tan, Azadeh Shakery, ChengXiang ...