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» Algorithms for subsequence combinatorics
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CPM
2005
Springer
97views Combinatorics» more  CPM 2005»
15 years 9 months ago
On the Complexity of Sparse Exon Assembly
Gene structure prediction is one of the most important problems in computational molecular biology. It involves two steps: the first is finding the evidence (e.g. predicting spl...
Carmel Kent, Gad M. Landau, Michal Ziv-Ukelson
CPM
2004
Springer
94views Combinatorics» more  CPM 2004»
15 years 9 months ago
Sorting by Length-Weighted Reversals: Dealing with Signs and Circularity
Abstract. We consider the problem of sorting linear and circular permutations and 0/1 sequences by reversals in a length-sensitive cost model. We extend the results on sorting by l...
Firas Swidan, Michael A. Bender, Dongdong Ge, Sima...
COMPGEOM
2007
ACM
15 years 8 months ago
An optimal generalization of the centerpoint theorem, and its extensions
We prove an optimal generalization of the centerpoint theorem: given a set P of n points in the plane, there exist two points (not necessarily among input points) that hit all con...
Saurabh Ray, Nabil H. Mustafa
JCB
2008
144views more  JCB 2008»
15 years 4 months ago
Multi-Break Rearrangements and Breakpoint Re-Uses: From Circular to Linear Genomes
Multi-break rearrangements break a genome into multiple fragments and further glue them together in a new order. While 2-break rearrangements represent standard reversals, fusions...
Max A. Alekseyev
CCO
2001
Springer
161views Combinatorics» more  CCO 2001»
15 years 8 months ago
Branch, Cut, and Price: Sequential and Parallel
Branch, cut, and price (BCP) is an LP-based branch and bound technique for solving large-scale discrete optimization problems (DOPs). In BCP, both cuts and variables can be generat...
Laszlo Ladányi, Ted K. Ralphs, Leslie E. Tr...