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» Algorithms for subsequence combinatorics
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COCOON
2008
Springer
15 years 6 months ago
Haplotype Inferring Via Galled-Tree Networks Is NP-Complete
The problem of determining haplotypes from genotypes has gained considerable prominence in the research community since the beginning of the HapMap project. Here the focus is on de...
Arvind Gupta, Ján Manuch, Ladislav Stacho, ...
SARA
2005
Springer
15 years 9 months ago
Learning Regular Expressions from Noisy Sequences
Abstract. The presence of long gaps dramatically increases the difficulty of detecting and characterizing complex events hidden in long sequences. In order to cope with this proble...
Ugo Galassi, Attilio Giordana
COCOON
2007
Springer
15 years 10 months ago
Online Interval Scheduling: Randomized and Multiprocessor Cases
We consider the problem of scheduling a set of equal-length intervals arriving online, where each interval is associated with a weight and the objective is to maximize the total we...
Stanley P. Y. Fung, Chung Keung Poon, Feifeng Zhen...
TCBB
2010
114views more  TCBB 2010»
15 years 2 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
RECOMB
2002
Springer
16 years 4 months ago
Monotony of surprise and large-scale quest for unusual words
The problem of characterizing and detecting recurrent sequence patterns such as substrings or motifs and related associations or rules is variously pursued in order to compress da...
Alberto Apostolico, Mary Ellen Bock, Stefano Lonar...