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» Algorithms for subsequence combinatorics
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STOC
2009
ACM
152views Algorithms» more  STOC 2009»
15 years 11 months ago
Green's conjecture and testing linear-invariant properties
A system of linear equations in p unknowns Mx = b is said to have the removal property if every set S ⊆ {1, . . . , n} which contains o(np− ) solutions of Mx = b can be turned...
Asaf Shapira
CPM
2006
Springer
112views Combinatorics» more  CPM 2006»
15 years 8 months ago
Local Alignment of RNA Sequences with Arbitrary Scoring Schemes
Abstract. Local similarity is an important tool in comparative analysis of biological sequences, and is therefore well studied. In particular, the Smith-Waterman technique and its ...
Rolf Backofen, Danny Hermelin, Gad M. Landau, Oren...
CPM
2006
Springer
125views Combinatorics» more  CPM 2006»
15 years 8 months ago
Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
Tetsuo Shibuya
CPM
2005
Springer
100views Combinatorics» more  CPM 2005»
15 years 6 months ago
Hardness of Optimal Spaced Seed Design
Abstract. Speeding up approximate pattern matching is a line of research in stringology since the 80’s. Practically fast approaches belong to the class of filtration algorithms,...
François Nicolas, Eric Rivals
DCC
2006
IEEE
16 years 3 months ago
Optimal Index Assignment for Multiple Description Lattice Vector Quantization
Optimal index assignment of multiple description lattice vector quantizer (MDLVQ) can be posed as a large-scale linear assignment problem. But is this expensive algorithmic approa...
Xiang Huang, Xiaolin Wu