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BIOINFORMATICS
2008
172views more  BIOINFORMATICS 2008»
13 years 8 months ago
Fitting a geometric graph to a protein-protein interaction network
Motivation: Finding a good network null model for protein-protein interaction (PPI) networks is a fundamental issue. Such a model would provide insights into the interplay between...
Desmond J. Higham, Marija Rasajski, Natasa Przulj
CGF
2005
111views more  CGF 2005»
13 years 7 months ago
Hierarchyless Simplification, Stripification and Compression of Triangulated Two Manifolds
In this paper we explore the algorithmic space in which stripification, simplification and geometric compression of triangulated 2-manifolds overlap. Edge-collase/uncollapse based...
Pablo Diaz-Gutierrez, Meenakshisundaram Gopi, Rena...
PVLDB
2008
126views more  PVLDB 2008»
13 years 7 months ago
Parallelizing query optimization
Many commercial RDBMSs employ cost-based query optimization exploiting dynamic programming (DP) to efficiently generate the optimal query execution plan. However, optimization tim...
Wook-Shin Han, Wooseong Kwak, Jinsoo Lee, Guy M. L...
ANCS
2009
ACM
13 years 5 months ago
Weighted random oblivious routing on torus networks
Torus, mesh, and flattened butterfly networks have all been considered as candidate architectures for on-chip interconnection networks. In this paper, we study the problem of opti...
Rohit Sunkam Ramanujam, Bill Lin
IANDC
2011
148views more  IANDC 2011»
13 years 2 months ago
Building species trees from larger parts of phylogenomic databases
Abstract. Gene trees are leaf-labeled trees inferred from molecular sequences. Due to duplication events arising in genome evolution, gene trees usually have multiple copies of som...
Celine Scornavacca, Vincent Berry, Vincent Ranwez