Abstract. We present a linguistically-motivated sub-sentential alignment system that extends the intersected IBM Model 4 word alignments. The alignment system is chunk-driven and r...
In the initial stage of sequence analysis, a biologist is first faced with the questions about how to choose the best tool to align sequences of interest and how to analyze and v...
Arthur Chun-Chieh Shih, D. T. Lee, Laurent Lin, Ch...
This paper proposes an approach to improve word alignment for languages with scarce resources using bilingual corpora of other language pairs. To perform word alignment between la...
We develop a novel and general approach to estimating the accuracy of protein multiple sequence alignments without knowledge of a reference alignment, and use our approach to addre...
Dan F. DeBlasio, Travis J. Wheeler, John D. Kececi...
Obtaining an accurate multiple alignment of protein sequences is a difficult computational problem for which many heuristic techniques sacrifice optimality to achieve reasonable r...