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BMCBI
2010
103views more  BMCBI 2010»
13 years 7 months ago
MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
Toshihide Hara, Keiko Sato, Masanori Ohya
ESWS
2008
Springer
13 years 9 months ago
Two Variations on Ontology Alignment Evaluation: Methodological Issues
Evaluation of ontology alignments is in practice done in two ways: (1) assessing individual correspondences and (2) comparing the alignment to a reference alignment. However, this ...
Laura Hollink, Mark van Assem, Shenghui Wang, Anto...
AINA
2008
IEEE
14 years 2 months ago
Introducing Variable Gap Penalties into Three-Sequence Alignment for Protein Sequences
The common-use gap penalty strategies, constant penalty and affine gap penalty, have been adopted in the traditional three-sequence alignment algorithm which considers the inserti...
Che-Lun Hung, Chun-Yuan Lin, Yeh-Ching Chung, Chua...
EMNLP
2009
13 years 5 months ago
Collocation Extraction Using Monolingual Word Alignment Method
Statistical bilingual word alignment has been well studied in the context of machine translation. This paper adapts the bilingual word alignment algorithm to monolingual scenario ...
Zhan-yi Liu, Haifeng Wang, Hua Wu, Sheng Li
BMCBI
2008
163views more  BMCBI 2008»
13 years 7 months ago
ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
Background: Multiple sequence alignments are a fundamental tool for the comparative analysis of proteins and nucleic acids. However, large data sets are no longer manageable for v...
Alberto I. Roca, Albert E. Almada, Aaron C. Abajia...