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NAACL
2007
15 years 5 months ago
Entity Extraction is a Boring Solved Problem - Or is it?
This paper presents empirical results that contradict the prevailing opinion that entity extraction is a boring solved problem. In particular, we consider data sets that resemble ...
Marc Vilain, Jennifer Su, Suzi Lubar
BMCBI
2008
123views more  BMCBI 2008»
15 years 3 months ago
PocketMatch: A new algorithm to compare binding sites in protein structures
Background: Recognizing similarities and deriving relationships among protein molecules is a fundamental requirement in present-day biology. Similarities can be present at various...
Kalidas Yeturu, Nagasuma Chandra
BMCBI
2006
120views more  BMCBI 2006»
15 years 3 months ago
Integrating protein structures and precomputed genealogies in the Magnum database: Examples with cellular retinoid binding prote
Background: When accurate models for the divergent evolution of protein sequences are integrated with complementary biological information, such as folded protein structures, anal...
Michael E. Bradley, Steven A. Benner
BMCBI
2006
141views more  BMCBI 2006»
15 years 3 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte
GLOBECOM
2007
IEEE
15 years 10 months ago
Degrees of Freedom of the MIMO X Channel
— We provide achievability as well as converse results for the degrees of freedom region of a MIMO X channel, i.e., a system with two transmitters, two receivers, each equipped w...
Syed Ali Jafar, Shlomo Shamai