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» Aligning Two Fragmented Sequences
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BMCBI
2010
137views more  BMCBI 2010»
13 years 10 months ago
BS Seeker: precise mapping for bisulfite sequencing
Background: Bisulfite sequencing using next generation sequencers yields genome-wide measurements of DNA methylation at single nucleotide resolution. Traditional aligners are not ...
Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini
LICS
2010
IEEE
13 years 8 months ago
Highly Acyclic Groups, Hypergraph Covers and the Guarded Fragment
We construct finite groups whose Cayley graphs have large girth even w.r.t. a discounted distance measure that contracts arbitrarily long sequences of edges from the same colour ...
Martin Otto
ISMDA
2005
Springer
14 years 3 months ago
Extracting Molecular Diversity Between Populations Through Sequence Alignments
The use of sequence alignments for establishing protein homology relationships has an extensive tradition in the field of bioinformatics, and there is an increasing desire for more...
Steinar Thorvaldsen, Tor Flå, Nils Willassen
ICPPW
2005
IEEE
14 years 3 months ago
Gene Sequence Alignment on a Public Computing Platform
Public computing can potentially supply not only computational power but also memory and short term storage resources to grid and cluster scale problems. Gene sequence alignment i...
Stephen Pellicer, Nova Ahmed, Yi Pan, Yao Zheng
WABI
2004
Springer
14 years 3 months ago
Chaining Algorithms for Alignment of Draft Sequence
Abstract. In this paper we propose a chaining method that can align a draft genomic sequence against a finished genome. We introduce the use of an overlap tree to enhance the state...
Mukund Sundararajan, Michael Brudno, Kerrin Small,...