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» Aligning Two Fragmented Sequences
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NAR
2006
76views more  NAR 2006»
13 years 9 months ago
CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments
We present an online server that generates a 3D representation of properties of user-submitted RNA or DNA alignments. The visualized properties are information of single alignment...
Eckart Bindewald, Thomas D. Schneider, Bruce A. Sh...
JCDL
2009
ACM
154views Education» more  JCDL 2009»
14 years 4 months ago
An alignment based system for chord sequence retrieval
Music retrieval systems for Western tonal music digital libraries have to consider rhythmic, timbral, melodic and harmonic information. Most existing retrieval systems only take i...
Pierre Hanna, Matthias Robine, Thomas Rocher
BIBE
2005
IEEE
14 years 3 months ago
Improved Phylogenetic Motif Detection Using Parsimony
We have recently demonstrated (La et al, Proteins, 58:2005) that sequence fragments approximating the overall familial phylogeny, called phylogenetic motifs (PMs), represent a pro...
Usman Roshan, Dennis R. Livesay, David La
BMCBI
2006
111views more  BMCBI 2006»
13 years 10 months ago
Tools for integrated sequence-structure analysis with UCSF Chimera
Background: Comparing related structures and viewing the structures in the context of sequence alignments are important tasks in protein structure-function research. While many pr...
Elaine C. Meng, Eric F. Pettersen, Gregory S. Couc...
BMCBI
2008
149views more  BMCBI 2008»
13 years 10 months ago
Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment s
Background: Confidence in pairwise alignments of biological sequences, obtained by various methods such as Blast or Smith-Waterman, is critical for automatic analyses of genomic d...
Olivier Bastien, Eric Maréchal