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» Aligning Two Fragmented Sequences
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TPDS
1998
112views more  TPDS 1998»
13 years 9 months ago
Parallel Computation in Biological Sequence Analysis
—A massive volume of biological sequence data is available in over 36 different databases worldwide, including the sequence data generated by the Human Genome project. These data...
Tieng K. Yap, Ophir Frieder, Robert L. Martino
BMCBI
2008
86views more  BMCBI 2008»
13 years 10 months ago
Subfamily specific conservation profiles for proteins based on n-gram patterns
Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
John K. Vries, Xiong Liu
LION
2009
Springer
114views Optimization» more  LION 2009»
14 years 4 months ago
Substitution Matrices and Mutual Information Approaches to Modeling Evolution
Abstract. Substitution matrices are at the heart of Bioinformatics: sequence alignment, database search, phylogenetic inference, protein family classication are based on Blosum, P...
Stephan Kitchovitch, Yuedong Song, Richard C. van ...
RECOMB
2001
Springer
14 years 10 months ago
Algorithms for phylogenetic footprinting
Phylogenetic footprinting is a comparative genomics approach for predicting transcription factor binding sites, where a set of orthologous regulatory regions are compared and short...
Mathieu Blanchette
TAL
2004
Springer
14 years 3 months ago
One Size Fits All? A Simple Technique to Perform Several NLP Tasks
Word fragments or n-grams have been widely used to perform different Natural Language Processing tasks such as information retrieval [1] [2], document categorization [3], automatic...
Daniel Gayo-Avello, Darío Álvarez Gu...