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» Aligning Two Fragmented Sequences
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IJCV
2006
266views more  IJCV 2006»
13 years 10 months ago
Kernel Density Estimation and Intrinsic Alignment for Shape Priors in Level Set Segmentation
In this paper, we make two contributions to the field of level set based image segmentation. Firstly, we propose shape dissimilarity measures on the space of level set functions wh...
Daniel Cremers, Stanley Osher, Stefano Soatto
BMCBI
2010
156views more  BMCBI 2010»
13 years 10 months ago
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways
Background: Pathways provide topical descriptions of cellular circuitry. Comparing analogous pathways reveals intricate insights into individual functional differences among speci...
Adi Mano, Tamir Tuller, Oded Béjà, R...
VLSISP
2010
119views more  VLSISP 2010»
13 years 4 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton
BMCBI
2010
93views more  BMCBI 2010»
13 years 10 months ago
JunctionViewer: customizable annotation software for repeat-rich genomic regions
Background: Repeat-rich regions such as centromeres receive less attention than their gene-rich euchromatic counterparts because the former are difficult to assemble and analyze. ...
Thomas K. Wolfgruber, Gernot G. Presting
BMCBI
2004
154views more  BMCBI 2004»
13 years 9 months ago
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
Background: With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than ...
Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasil...