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» Aligning Two Fragmented Sequences
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NAR
2008
119views more  NAR 2008»
13 years 10 months ago
MALISAM: a database of structurally analogous motifs in proteins
MALISAM (manual alignments for structurally analogous motifs) represents the first database containing pairs of structural analogs and their alignments. To find reliable analogs, ...
Hua Cheng, Bong-Hyun Kim, Nick V. Grishin
COLING
2000
13 years 11 months ago
Structural Feature Selection For English-Korean Statistical Machine Translation
When aligning texts in very different languages such as Korean and English, structural features beyond word or phrase give useful intbrmation. In this paper, we present a method f...
Seonho Kim, Juntae Yoon, Mansuk Song
WABI
2010
Springer
167views Bioinformatics» more  WABI 2010»
13 years 8 months ago
Quantifying the Strength of Natural Selection of a Motif Sequence
Quantification of selective pressures on regulatory sequences is a central question in studying the evolution of gene regulatory networks. Previous methods focus primarily on sing...
Chen-Hsiang Yeang
BMCBI
2006
129views more  BMCBI 2006»
13 years 10 months ago
BIPAD: A web server for modeling bipartite sequence elements
Background: Many dimeric protein complexes bind cooperatively to families of bipartite nucleic acid sequence elements, which consist of pairs of conserved half-site sequences sepa...
Chengpeng Bi, Peter K. Rogan
BMCBI
2010
133views more  BMCBI 2010»
13 years 7 months ago
Initial steps towards a production platform for DNA sequence analysis on the grid
Background: Bioinformatics is confronted with a new data explosion due to the availability of high throughput DNA sequencers. Data storage and analysis becomes a problem on local ...
Angela C. M. Luyf, Barbera D. C. van Schaik, Miche...