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» Aligning alignments exactly
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GCB
2004
Springer
139views Biometrics» more  GCB 2004»
14 years 24 days ago
Graph Alignments: A New Concept to Detect Conserved Regions in Protein Active Sites
: We introduce the novel concept of graph alignment, a generalization of graph isomorphism that is motivated by the commonly used multiple sequence alignments. Graph alignments and...
Nils Weskamp, Eyke Hüllermeier, Daniel Kuhn, ...
KCAP
2009
ACM
14 years 2 days ago
Combining vocabulary alignment techniques
Identifying alignments between vocabularies has become a central knowledge engineering activity. A plethora of alignment techniques has been developed over the past years. In this...
Anna Tordai, Jacco van Ossenbruggen, Guus Schreibe...
NAACL
2007
13 years 8 months ago
Applying Many-to-Many Alignments and Hidden Markov Models to Letter-to-Phoneme Conversion
Letter-to-phoneme conversion generally requires aligned training data of letters and phonemes. Typically, the alignments are limited to one-to-one alignments. We present a novel t...
Sittichai Jiampojamarn, Grzegorz Kondrak, Tarek Sh...
BMCBI
2008
109views more  BMCBI 2008»
13 years 7 months ago
The meaning of alignment: lessons from structural diversity
Background: Protein structural alignment provides a fundamental basis for deriving principles of functional and evolutionary relationships. It is routinely used for structural cla...
Walter Pirovano, K. Anton Feenstra, Jaap Heringa
NAR
2006
129views more  NAR 2006»
13 years 7 months ago
AliWABA: alignment on the web through an A-Bruijn approach
Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
Neil C. Jones, Degui Zhi, Benjamin J. Raphael