We propose two novel dynamic programming (DP) methods that solve the the approximate bounded and unbounded global alignment problems for biological sequences. Our first method so...
Tamer Kahveci, Venkatakrishnan Ramaswamy, Han Tao,...
PSI-BLAST remains one of the popular tools for searching remote homologs in sequence databases. We recently demonstrated that hybrid alignment can function as the alignment core f...
Obtaining an accurate multiple alignment of protein sequences is a difficult computational problem for which many heuristic techniques sacrifice optimality to achieve reasonable r...
This paper proposes an approach to improve word alignment for languages with scarce resources using bilingual corpora of other language pairs. To perform word alignment between la...
In this paper, we address the peak detection and alignment problem in the analysis of mass spectrometry data. To deal with the peak redundancy problem existing in the MALDI data a...
Weichuan Yu, Baolin Wu, Ning Lin, Kathy Stone, Ken...