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» Aligning alignments exactly
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ER
2008
Springer
91views Database» more  ER 2008»
14 years 22 days ago
Model Driven Specification of Ontology Translations
Abstract. The alignment of different ontologies requires the specification, representation and execution of translation rules. The rules need to integrate translations at the lexic...
Fernando Silva Parreiras, Steffen Staab, Simon Sch...
ISMB
1996
14 years 8 days ago
Parameterization Studies for the SAM and HMMER Methods of Hidden Markov Model Generation
Multiple sequence alignment of distantly related viral proteins remains a challenge to all currently available alignment methods. The hidden Markovmodel approach offers a new,flex...
Marcella A. McClure, Chris Smith, Pete Elton
ICIP
2004
IEEE
15 years 17 days ago
Fast alignment of digital images using a lower bound on an entropy metric
We propose a registration algorithm based on successively refined quantization and an alignment metric derived from a minimal spanning tree entropy estimate. The metric favors edg...
Mert R. Sabuncu, Peter J. Ramadge
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
14 years 5 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 4 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci