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» Aligning alignments exactly
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149
Voted
VLDB
2004
ACM
118views Database» more  VLDB 2004»
15 years 9 months ago
On the performance of bitmap indices for high cardinality attributes
It is well established that bitmap indices are efficient for read-only attributes with low attribute cardinalities. For an attribute with a high cardinality, the size of the bitma...
Kesheng Wu, Ekow J. Otoo, Arie Shoshani
131
Voted
CCGRID
2003
IEEE
15 years 8 months ago
A Parallel FPT Application For Clusters
Fixed-parameter tractability (FPT) techniques have recently been successful in solving NP-complete problem instances of practical importance which were too large to be solved with...
James Cheetham, Frank K. H. A. Dehne, Andrew Rau-C...
151
Voted
CSB
2003
IEEE
106views Bioinformatics» more  CSB 2003»
15 years 8 months ago
Reconstruction of Ancestral Gene Order after Segmental Duplication and Gene Loss
As gene order evolves through a variety of chromosomal rearrangements, conserved segments provide important insight into evolutionary relationships and functional roles of genes. ...
Jun Huan, Jan Prins, Wei Wang 0010, Todd J. Vision
117
Voted
CSB
2003
IEEE
15 years 8 months ago
Search for Evolution-Related-Oligonucleotides and Conservative Words in rRNA Sequences
We describe a method for finding ungapped conserved words in rRNA sequences that is effective, utilizes evolutionary information and does not depend on multiple sequence alignment...
Liaofu Luo, Li-Ching Hsieh, Fengmin Ji, Mengwen Ji...
120
Voted
CSB
2003
IEEE
15 years 8 months ago
LOGOS: a modular Bayesian model for de novo motif detection
The complexity of the global organization and internal structures of motifs in higher eukaryotic organisms raises significant challenges for motif detection techniques. To achiev...
Eric P. Xing, Wei Wu, Michael I. Jordan, Richard M...