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» Alignment and Distribution is NOT (Always) NP-Hard
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CJ
1999
87views more  CJ 1999»
13 years 7 months ago
Evolution-Based Scheduling of Computations and Communications on Distributed Memory Multicomputers
We present a compiler optimization approach that uses the simulated evolution (SE) paradigm to enhance the finish time of heuristically scheduled computations with communication t...
Mayez A. Al-Mouhamed
SC
2009
ACM
14 years 2 months ago
Highly scalable genome assembly on campus grids
Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
IPPS
2007
IEEE
14 years 1 months ago
Improving MPI Independent Write Performance Using A Two-Stage Write-Behind Buffering Method
Many large-scale production applications often have very long executions times and require periodic data checkpoints in order to save the state of the computation for program rest...
Wei-keng Liao, Avery Ching, Kenin Coloma, Alok N. ...
IEEESCC
2006
IEEE
14 years 1 months ago
Ontology Reconciliation for Service-Oriented Computing
Service-oriented computing (SOC) is viewed as the computing paradigm of the near future, allowing for the dynamic interaction of services provided by distributed business partners...
Jingshan Huang, Jiangbo Dang, Michael N. Huhns
IPPS
2005
IEEE
14 years 1 months ago
RC-BLAST: Towards a Portable, Cost-Effective Open Source Hardware Implementation
Basic Local Alignment Search Tool (BLAST) is a standard computer application that molecular biologists use to search for sequence similarity in genomic databases. This report desc...
Krishna Muriki, Keith D. Underwood, Ron Sass