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» Alignment and Distribution is NOT (Always) NP-Hard
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ISHPC
2003
Springer
14 years 24 days ago
Performance Study of a Whole Genome Comparison Tool on a Hyper-Threading Multiprocessor
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
BMCBI
2008
130views more  BMCBI 2008»
13 years 7 months ago
A novel series of compositionally biased substitution matrices for comparing Plasmodium proteins
Background: The most common substitution matrices currently used (BLOSUM and PAM) are based on protein sequences with average amino acid distributions, thus they do not represent ...
Kevin Brick, Elisabetta Pizzi
ICPP
1998
IEEE
13 years 12 months ago
Minimizing Data and Synchronization Costs in One-Way Communication
In contrast to the conventional send/receive model, the one-way communication model--using Put and Synch--allows the decoupling of message transmission from synchronization. This ...
Mahmut T. Kandemir, U. Nagaraj Shenoy, Prithviraj ...
ISMB
2001
13 years 9 months ago
Using mixtures of common ancestors for estimating the probabilities of discrete events in biological sequences
Accurately estimating probabilities from observations is important for probabilistic-based approaches to problems in computational biology. In this paper we present a biologically...
Eleazar Eskin, William Noble Grundy, Yoram Singer
OSS
2007
Springer
14 years 1 months ago
Release Management in Free Software Projects: Practices and Problems
Abstract. Release management plays an important role in every software project since it is concerned with the delivery of a high quality product to end-users. This paper explores r...
Martin Michlmayr, Francis Hunt, David Probert