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» Alignment of Non-Overlapping Sequences
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GCB
2003
Springer
105views Biometrics» more  GCB 2003»
14 years 3 months ago
In silico prediction of UTR repeats using clustered EST data
Clustering of EST data is a method for the non-redundant representation of an organisms transcriptome. During clustering of large amounts of EST data, usually some large clusters ...
Stefan A. Rensing, Daniel Lang, Ralf Reski
BMCBI
2006
158views more  BMCBI 2006»
13 years 10 months ago
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
Background: Non-coding RNAs (ncRNAs) have a multitude of roles in the cell, many of which remain to be discovered. However, it is difficult to detect novel ncRNAs in biochemical s...
Andrew V. Uzilov, Joshua M. Keegan, David H. Mathe...
BMCBI
2004
154views more  BMCBI 2004»
13 years 10 months ago
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
Background: With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than ...
Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasil...
BMCBI
2008
103views more  BMCBI 2008»
13 years 10 months ago
TOPS++FATCAT: Fast flexible structural alignment using constraints derived from TOPS+ Strings Model
Background: Protein structure analysis and comparison are major challenges in structural bioinformatics. Despite the existence of many tools and algorithms, very few of them have ...
Mallika Veeramalai, Yuzhen Ye, Adam Godzik
PAMI
2008
146views more  PAMI 2008»
13 years 10 months ago
Video Event Recognition Using Kernel Methods with Multilevel Temporal Alignment
In this work, we systematically study the problem of event recognition in unconstrained news video sequences. We adopt the discriminative kernel-based method for which video clip s...
Dong Xu, Shih-Fu Chang