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» Alignment of Non-Overlapping Sequences
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LPAR
2005
Springer
14 years 3 months ago
Comparative Similarity, Tree Automata, and Diophantine Equations
The notion of comparative similarity ‘X is more similar or closer to Y than to Z’ has been investigated in both foundational and applied areas of knowledge representation and r...
Mikhail Sheremet, Dmitry Tishkovsky, Frank Wolter,...
FPL
2008
Springer
150views Hardware» more  FPL 2008»
13 years 11 months ago
Compiler generated systolic arrays for wavefront algorithm acceleration on FPGAs
Wavefront algorithms, such as the Smith-Waterman algorithm, are commonly used in bioinformatics for exact local and global sequence alignment. These algorithms are highly computat...
Betul Buyukkurt, Walid A. Najjar
AAAI
2004
13 years 11 months ago
Space-Efficient Memory-Based Heuristics
A memory-based heuristic is a heuristic function that is stored in a lookup table. Very accurate heuristics have been created by building very large lookup tables, sometimes calle...
Rong Zhou, Eric A. Hansen
ISMB
1998
13 years 11 months ago
Bayesian Protein Family Classifier
A Bayesian procedure for the simultaneous alignment and classification of sequences into subclasses is described. This Gibbs sampling algorithm iterates between an alignment step ...
Kunbin Qu, Lee Ann McCue, Charles E. Lawrence
JIIS
2006
147views more  JIIS 2006»
13 years 10 months ago
Mining sequential patterns from data streams: a centroid approach
In recent years, emerging applications introduced new constraints for data mining methods. These constraints are typical of a new kind of data: the data streams. In data stream pro...
Alice Marascu, Florent Masseglia