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» Alignment of Non-Overlapping Sequences
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BMCBI
2010
130views more  BMCBI 2010»
13 years 10 months ago
Amino acid "little Big Bang": Representing amino acid substitution matrices as dot products of Euclidian vectors
Background: Sequence comparisons make use of a one-letter representation for amino acids, the necessary quantitative information being supplied by the substitution matrices. This ...
Karel Zimmermann, Jean-François Gibrat
BMCBI
2008
99views more  BMCBI 2008»
13 years 10 months ago
Multiple organism algorithm for finding ultraconserved elements
Background: Ultraconserved elements are nucleotide or protein sequences with 100% identity (no mismatches, insertions, or deletions) in the same organism or between two or more or...
Scott Christley, Neil F. Lobo, Gregory R. Madey
BMCBI
2006
98views more  BMCBI 2006»
13 years 10 months ago
Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation
Background: Publicly accessible EST libraries contain valuable information that can be utilized for studies of tissue-specific gene expression and processing of individual genes. ...
Donglin Liu, Joel H. Graber
BMCBI
2004
120views more  BMCBI 2004»
13 years 9 months ago
An approach to large scale identification of non-obvious structural similarities between proteins
Background: A new sequence independent bioinformatics approach allowing genome-wide search for proteins with similar three dimensional structures has been developed. By utilizing ...
Artem Cherkasov, Steven J. M. Jones
CVPR
2004
IEEE
14 years 12 months ago
A Unified Framework for Uncertainty Propagation in Automatic Shape Tracking
Uncertainty handling plays an important role during shape tracking. We have recently shown that the fusion of measurement information with system dynamics and shape priors greatly...
Xiang Sean Zhou, Dorin Comaniciu, Binglong Xie, R....