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» Alignment of Non-Overlapping Sequences
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CEC
2005
IEEE
14 years 3 months ago
Multiobjective clustering around medoids
Abstract- The large majority of existing clustering algorithms are centered around the notion of a feature, that is, individual data items are represented by their intrinsic proper...
Julia Handl, Joshua D. Knowles
CF
2007
ACM
14 years 1 months ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
PETRA
2010
ACM
13 years 11 months ago
Benchmarking dynamic time warping for music retrieval
We study the performance of three dynamic programming methods on music retrieval. The methods are designed for time series matching but can be directly applied to retrieval of mus...
Jefrey Lijffijt, Panagiotis Papapetrou, Jaakko Hol...
BMCBI
2010
123views more  BMCBI 2010»
13 years 10 months ago
A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction
Background: Predicting which molecules can bind to a given binding site of a protein with known 3D structure is important to decipher the protein function, and useful in drug desi...
Brice Hoffmann, Mikhail Zaslavskiy, Jean-Philippe ...
BMCBI
2008
142views more  BMCBI 2008»
13 years 10 months ago
Strategies for measuring evolutionary conservation of RNA secondary structures
Background: Evolutionary conservation of RNA secondary structure is a typical feature of many functional non-coding RNAs. Since almost all of the available methods used for predic...
Andreas R. Gruber, Stephan H. F. Bernhart, Ivo L. ...