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» Alignment of Non-Overlapping Sequences
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BIOINFORMATICS
2000
110views more  BIOINFORMATICS 2000»
13 years 10 months ago
ProtEST: protein multiple sequence alignments from expressed sequence tags
James A. Cuff, Ewan Birney, Michele E. Clamp, Geof...
DEXA
2007
Springer
150views Database» more  DEXA 2007»
14 years 4 months ago
Sequence Alignment as a Database Technology Challenge
Abstract. Sequence alignment is an important task for molecular biologists. Because alignment basically deals with approximate string matching on large biological sequence collecti...
Hans Philippi
BMCBI
2010
103views more  BMCBI 2010»
13 years 11 months ago
MTRAP: Pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of r
Background: Sequence alignment is one of the most important techniques to analyze biological systems. It is also true that the alignment is not complete and we have to develop it ...
Toshihide Hara, Keiko Sato, Masanori Ohya
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
14 years 5 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
ALMOB
2008
82views more  ALMOB 2008»
13 years 11 months ago
Protein sequence and structure alignments within one framework
Background: Protein structure alignments are usually based on very different techniques to sequence alignments. We propose a method which treats sequence, structure and even combi...
Gundolf Schenk, Thomas Margraf, Andrew E. Torda