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» Alignment of Non-Overlapping Sequences
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BMCBI
2010
150views more  BMCBI 2010»
13 years 11 months ago
Evolutionary rates at codon sites may be used to align sequences and infer protein domain function
Background: Sequence alignments form part of many investigations in molecular biology, including the determination of phylogenetic relationships, the prediction of protein structu...
Pierre M. Durand, Scott Hazelhurst, Theresa L. Coe...
BMCBI
2010
138views more  BMCBI 2010»
13 years 11 months ago
Sigma-2: Multiple sequence alignment of non-coding DNA via an evolutionary model
Background: While most multiple sequence alignment programs expect that all or most of their input is known to be homologous, and penalise insertions and deletions, this is not a ...
Gayathri Jayaraman, Rahul Siddharthan
BMCBI
2005
125views more  BMCBI 2005»
13 years 10 months ago
DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment
Background: We present a complete re-implementation of the segment-based approach to multiple protein alignment that contains a number of improvements compared to the previous ver...
Amarendran R. Subramanian, Jan Weyer-Menkhoff, Mic...
ICDAR
2011
IEEE
12 years 10 months ago
HMM-Based Alignment of Inaccurate Transcriptions for Historical Documents
—For historical documents, available transcriptions typically are inaccurate when compared with the scanned document images. Not only the position of the words and sentences are ...
Andreas Fischer, Emanuel Indermühle, Volkmar ...
BMCBI
2008
78views more  BMCBI 2008»
13 years 11 months ago
A new protein linear motif benchmark for multiple sequence alignment software
Background: Linear motifs (LMs) are abundant short regulatory sites used for modulating the functions of many eukaryotic proteins. They play important roles in post-translational ...
Emmanuel Perrodou, Claudia Chica, Olivier Poch, To...