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» Alignment of Non-Overlapping Sequences
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BMCBI
2008
109views more  BMCBI 2008»
13 years 10 months ago
The meaning of alignment: lessons from structural diversity
Background: Protein structural alignment provides a fundamental basis for deriving principles of functional and evolutionary relationships. It is routinely used for structural cla...
Walter Pirovano, K. Anton Feenstra, Jaap Heringa
BMEI
2008
IEEE
14 years 5 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
BMCBI
2010
155views more  BMCBI 2010»
13 years 8 months ago
BrEPS: a flexible and automatic protocol to compute enzyme-specific sequence profiles for functional annotation
Background: Models for the simulation of metabolic networks require the accurate prediction of enzyme function. Based on a genomic sequence, enzymatic functions of gene products a...
Constantin Bannert, A. Welfle, C. aus dem Spring, ...
ICMCS
2009
IEEE
158views Multimedia» more  ICMCS 2009»
13 years 8 months ago
Accurate alignment of presentation slides with educational video
Spatio-temporal alignment of electronic slides with corresponding presentation video opens up a number of possibilities for making the instructional content more accessible and un...
Quanfu Fan, Kobus Barnard, Arnon Amir, Alon Efrat
ACL
2009
13 years 8 months ago
Coordinate Structure Analysis with Global Structural Constraints and Alignment-Based Local Features
We propose a hybrid approach to coordinate structure analysis that combines a simple grammar to ensure consistent global structure of coordinations in a sentence, and features bas...
Kazuo Hara, Masashi Shimbo, Hideharu Okuma, Yuji M...