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» Alignment of Non-Overlapping Sequences
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101
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IDA
2007
Springer
15 years 8 months ago
Learning to Align: A Statistical Approach
We present a new machine learning approach to the inverse parametric sequence alignment problem: given as training examples a set of correct pairwise global alignments, find the p...
Elisa Ricci, Tijl De Bie, Nello Cristianini
111
Voted
EUSFLAT
2003
122views Fuzzy Logic» more  EUSFLAT 2003»
15 years 4 months ago
Structure recognition on sequences with a neuro-fuzzy-system
We present a formal description of a neurofuzzy system capable of aligning two sequences recognizing their internal structure. The alignment is done on two levels: grouping of the...
Klaus Dalinghaus, Tillman Weyde
181
Voted
BMCBI
2011
14 years 9 months ago
PileLine: a toolbox to handle genome position information in next-generation sequencing studies
Background: Genomic position (GP) files currently used in next-generation sequencing (NGS) studies are always difficult to manipulate due to their huge size and the lack of approp...
Daniel Glez-Peña, Gonzalo Gómez-L&oa...
107
Voted
RECOMB
2002
Springer
16 years 3 months ago
Significance Of inter-species matches when evolutionary rate varies
We develop techniques to estimate the statistical significance of gap-free alignments between two genomic DNA sequences, using human-mouse alignments as an example. The sequences ...
Jia Li, Webb Miller
129
Voted
WABI
2010
Springer
172views Bioinformatics» more  WABI 2010»
15 years 1 months ago
Fast Mapping and Precise Alignment of AB SOLiD Color Reads to Reference DNA
Abstract. Applied Biosystems’ SOLiD system offers a low-cost alternative to the traditional Sanger method of DNA sequencing. We introduce two main algorithms of mapping SOLiD’...
Miklós Csürös, Szilveszter Juhos,...