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» Alignment of Non-Overlapping Sequences
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BMCBI
2010
137views more  BMCBI 2010»
13 years 10 months ago
BS Seeker: precise mapping for bisulfite sequencing
Background: Bisulfite sequencing using next generation sequencers yields genome-wide measurements of DNA methylation at single nucleotide resolution. Traditional aligners are not ...
Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini
JCB
2007
107views more  JCB 2007»
13 years 10 months ago
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics
Long-range correlations in genomic base composition are a ubiquitous statistical feature among many eukaryotic genomes. In this article, these correlations are shown to substantia...
Philipp W. Messer, Ralf Bundschuh, Martin Vingron,...
BIB
2008
86views more  BIB 2008»
13 years 10 months ago
Recent developments in the MAFFT multiple sequence alignment program
The accuracy and scalability of multiple sequence alignment (MSA) of DNAs and proteins have long been and are still important issues in bioinformatics. To rapidly construct a reas...
Kazutaka Katoh, Hiroyuki Toh
ICPP
2003
IEEE
14 years 3 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
CORR
2010
Springer
120views Education» more  CORR 2010»
13 years 7 months ago
Advances in the Biomedical Applications of the EELA Project
In the last years an increasing demand for Grid Infrastructures has result edin several international collaborations. This is the case of the EELA Project, which has brought togeth...
Vicente Hernández, Ignacio Blanquer, Gabrie...