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» Alignment of Non-Overlapping Sequences
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EVOW
2010
Springer
14 years 1 months ago
Improving Multi-Relief for Detecting Specificity Residues from Multiple Sequence Alignments
A challenging problem in bioinformatics is the detection of residues that account for protein function specificity, not only in order to gain deeper insight in the nature of functi...
Elena Marchiori
JVCA
2006
63views more  JVCA 2006»
13 years 10 months ago
Temporal alignment of communicative gesture sequences
In this paper we address the problem of temporal alignment applied to captured communicative gestures conveying different styles. We propose a representation space that may be con...
Alexis Heloir, Nicolas Courty, Sylvie Gibet, Franc...
BMCBI
2008
176views more  BMCBI 2008»
13 years 10 months ago
H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
Background: A multiple sequence alignment (MSA) generated for a protein can be used to characterise residues by means of a statistical analysis of single columns. In addition to t...
Rainer Merkl, Matthias Zwick
COCOON
2008
Springer
14 years 4 days ago
Sequence Alignment Algorithms for Run-Length-Encoded Strings
A unified framework is applied to solving various sequence comparison problems for run-length encoded strings. All of these algorithms take O(min{mn , m n}) time and O(max{m, n}) s...
Guan-Shieng Huang, Jia Jie Liu, Yue-Li Wang
BMCBI
2008
114views more  BMCBI 2008»
13 years 10 months ago
Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins
Background: Insertions and deletions (indels) represent a common type of sequence variations, which are less studied and pose many important biological questions. Recent research ...
Michael Hsing, Artem Cherkasov