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» Alignment of Non-Overlapping Sequences
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ACSAC
2003
IEEE
14 years 3 months ago
Intrusion Detection: A Bioinformatics Approach
This paper addresses the problem of detecting masquerading, a security attack in which an intruder assumes the identity of a legitimate user. Many approaches based on Hidden Marko...
Scott E. Coull, Joel W. Branch, Boleslaw K. Szyman...
CPM
2005
Springer
125views Combinatorics» more  CPM 2005»
14 years 6 days ago
Parametric Analysis for Ungapped Markov Models of Evolution
We present efficient sensitivity-analysis algorithms for two problems involving Markov models of sequence evolution: ancestral reconstruction in evolutionary trees and local ungap...
David Fernández-Baca, Balaji Venkatachalam
TCBB
2010
114views more  TCBB 2010»
13 years 8 months ago
Cache-Oblivious Dynamic Programming for Bioinformatics
— We present efficient cache-oblivious algorithms for some well-studied string problems in bioinformatics including the longest common subsequence, global pairwise sequence alig...
Rezaul Alam Chowdhury, Hai-son Le, Vijaya Ramachan...
ACL
2009
13 years 8 months ago
Reducing the Annotation Effort for Letter-to-Phoneme Conversion
Letter-to-phoneme (L2P) conversion is the process of producing a correct phoneme sequence for a word, given its letters. It is often desirable to reduce the quantity of training d...
Kenneth Dwyer, Grzegorz Kondrak
ICMLA
2009
13 years 8 months ago
Structured Prediction with Relative Margin
In structured prediction problems, outputs are not confined to binary labels; they are often complex objects such as sequences, trees, or alignments. Support Vector Machine (SVM) ...
Pannagadatta K. Shivaswamy, Tony Jebara