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» Alignment of Polarized Sets
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BMCBI
2006
115views more  BMCBI 2006»
15 years 4 months ago
The accuracy of several multiple sequence alignment programs for proteins
Background: There have been many algorithms and software programs implemented for the inference of multiple sequence alignments of protein and DNA sequences. The "true" ...
Paulo A. S. Nuin, Zhouzhi Wang, Elisabeth R. M. Ti...
ISMIR
2004
Springer
124views Music» more  ISMIR 2004»
15 years 9 months ago
Eigenrhythms: Drum pattern basis sets for classification and generation
We took a collection of 100 drum beats from popular music tracks and estimated the measure length and downbeat position of each one. Using these values, we normalized each pattern...
Dan Ellis, John Arroyo
CSB
2005
IEEE
167views Bioinformatics» more  CSB 2005»
15 years 9 months ago
SinicView: An Interactive Visualization Tool for Comparison of Multiple Sequence Alignment Results
In the initial stage of sequence analysis, a biologist is first faced with the questions about how to choose the best tool to align sequences of interest and how to analyze and v...
Arthur Chun-Chieh Shih, D. T. Lee, Laurent Lin, Ch...
BMCBI
2008
122views more  BMCBI 2008»
15 years 4 months ago
Grammar-based distance in progressive multiple sequence alignment
Background: We propose a multiple sequence alignment (MSA) algorithm and compare the alignment-quality and execution-time of the proposed algorithm with that of existing algorithm...
David J. Russell, Hasan H. Otu, Khalid Sayood
BMCBI
2004
177views more  BMCBI 2004»
15 years 3 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu