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» Alignment of Polarized Sets
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JCB
2002
116views more  JCB 2002»
15 years 3 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 10 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
GCB
2001
Springer
111views Biometrics» more  GCB 2001»
15 years 8 months ago
Approximate Bayesian Discrimination between Alternative DNA Mosaic Structures
: We derive an approximate Bayesian hypothesis test to discriminate between alternative mosaic structures of DNA sequence alignments, and test the viability of this approach on a s...
Dirk Husmeier, Frank Wright
NAACL
2010
15 years 2 months ago
Prenominal Modifier Ordering via Multiple Sequence Alignment
Producing a fluent ordering for a set of prenominal modifiers in a noun phrase (NP) is a problematic task for natural language generation and machine translation systems. We prese...
Aaron Dunlop, Margaret Mitchell, Brian Roark
COLING
2010
14 years 11 months ago
Improved Unsupervised Sentence Alignment for Symmetrical and Asymmetrical Parallel Corpora
We address the problem of unsupervised and language-pair independent alignment of symmetrical and asymmetrical parallel corpora. Asymmetrical parallel corpora contain a large prop...
Fabienne Braune, Alexander Fraser