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» Alignment of Polarized Sets
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ALMOB
2008
160views more  ALMOB 2008»
15 years 4 months ago
Syntenator: Multiple gene order alignments with a gene-specific scoring function
Background: Identification of homologous regions or conserved syntenies across genomes is one crucial step in comparative genomics. This task is usually performed by genome alignm...
Christian Rödelsperger, Christoph Dieterich
BMCBI
2006
165views more  BMCBI 2006»
15 years 4 months ago
Improving the quality of protein structure models by selecting from alignment alternatives
Background: In the area of protein structure prediction, recently a lot of effort has gone into the development of Model Quality Assessment Programs (MQAPs). MQAPs distinguish hig...
Ingolf Sommer, Stefano Toppo, Oliver Sander, Thoma...
BMCBI
2005
306views more  BMCBI 2005»
15 years 4 months ago
A method for aligning RNA secondary structures and its application to RNA motif detection
Background: Alignment of RNA secondary structures is important in studying functional RNA motifs. In recent years, much progress has been made in RNA motif finding and structure a...
Jianghui Liu, Jason Tsong-Li Wang, Jun Hu, Bin Tia...
SEMWEB
2009
Springer
15 years 11 months ago
Alignment Results of SOBOM for OAEI 2009
In this paper we give a brief explanation of how Anchor Concept and Sub-Ontology based Ontology Matching (SOBOM) gets the alignment results at OAEI2009. SOBOM deal with the ontolog...
Peigang Xu, Haijun Tao, Tianyi Zang, Yadong Wang
PLDI
2004
ACM
15 years 10 months ago
Vectorization for SIMD architectures with alignment constraints
When vectorizing for SIMD architectures that are commonly employed by today’s multimedia extensions, one of the new challenges that arise is the handling of memory alignment. Pr...
Alexandre E. Eichenberger, Peng Wu, Kevin O'Brien