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» Alignment of RNA base pairing probability matrices
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EMNLP
2009
13 years 5 months ago
Parser Adaptation and Projection with Quasi-Synchronous Grammar Features
We connect two scenarios in structured learning: adapting a parser trained on one corpus to another annotation style, and projecting syntactic annotations from one language to ano...
David A. Smith, Jason Eisner
BMCBI
2006
87views more  BMCBI 2006»
13 years 7 months ago
Phylogeny based discovery of regulatory elements
Background: Algorithms that locate evolutionarily conserved sequences have become powerful tools for finding functional DNA elements, including transcription factor binding sites;...
Jason Gertz, Justin C. Fay, Barak A. Cohen
BMCBI
2006
92views more  BMCBI 2006»
13 years 7 months ago
Recrafting the neighbor-joining method
Background: The neighbor-joining method by Saitou and Nei is a widely used method for constructing phylogenetic trees. The formulation of the method gives rise to a canonical (n3)...
Thomas Mailund, Gerth Stølting Brodal, Rolf...
BMCBI
2005
169views more  BMCBI 2005»
13 years 7 months ago
Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthe
Background: Synthetic lethality experiments identify pairs of genes with complementary function. More direct functional associations (for example greater probability of membership...
Yan Qi 0003, Ping Ye, Joel S. Bader
ICPR
2002
IEEE
14 years 8 months ago
Bayesian Pot-Assembly from Fragments as Problems in Perceptual-Grouping and Geometric-Learning
A heretofore unsolved problem of great archaeological importance is the automatic assembly of pots made on a wheel from the hundreds (or thousands) of sherds found at an excavatio...
David B. Cooper, Andrew R. Willis, Stuart Andrews,...